Issue Title
Vol 19: Supplement A Deep sequencing exposes small RNA transcriptome differences between low- and high-temperature stress responses in Arabidopsis Abstract  PDF
Vesselin Baev, Ivan Milev, Mladen Naydenov, Tihomir Vachev, Elena Apostolova, Nikolay Mehterov, Mariana Gozmanova, Ivan Minkov, Galina Yahubyan
Vol 17: Supplement B Improved analysis of fungal communities using the next-generation-sequencing analysis of rpb2 genes Abstract  PDF
Tomas Vetrovsky, Jana Voriskova, Lucia Zifcakova, Michaela Urbanova, Petr Baldrian
Vol 17: Supplement B In the Shadow of the Genome: A Challenging Journey to Diversity in Leishmania donovani Abstract  PDF
Hideo Imamura, An Mannaert, Tim Downing, Matthew Berriman, Jean-Claude Dujardin
Vol 17: Supplement B NGS data analysis: the user POV Abstract  PDF
Jose R. Valverde, Jose M. Rodríguez, Alexandro Rodriguez-Rojas, Alejandro Couce, Jesus Blazquez
Vol 18: Supplement A Non-coding RNA bioinformatics platform for full backing of the high-throughput sequencing experiments generated by next-generation sequencing technologies Abstract  PDF
F Licciulli, A Consiglio, G De Caro, A Gisel, G Grillo, A Tulipano, S Liuni
Vol 17: Supplement B IT Future of Medicine: Next Generation Sequencing is the Key to Future Personalized Medicine Abstract  PDF
Hans Lehrach, Babette Regierer
Vol 17: Supplement B NGS research and service at the CBU Abstract  PDF
Kjell Petersen, Inge Jonassen
Vol 17: Supplement B Algorithm for error detection in metagonomics NGS data Abstract  PDF
Dimitar Vassilev, Milko Krachunov, Ivan Popov, Elena Todorovska, Valeria Simeonova, Pawel Szczesny, Pawel Siedlecki, Urszula Zelenkiewicz
Vol 17: Supplement B Massive-scale RNA-Seq experiments in human genetic diseases Abstract  PDF
Valerio Costa, Marianna Aprile, Roberta Esposito, Maria Rosaria Ambrosio, Margherita Scarpato, Carmela Ziviello, Italia De Feis, Claudia Angelini, Alfredo Ciccodicola
Vol 17: Supplement B Innovation and Trends with In-Memory Technology Abstract  PDF
Matthias Steinbrecher
Vol 17: Supplement B An Integrated RNA-seq Atlas of the Murine T-Helper Cell Transcriptome Abstract  PDF
Andrew Deonarine
Vol 17: Supplement B Oncogenomics of the Hormone-responsive Breast Cancer Phenotype by NGS Abstract  PDF
Alessandro Weisz
Vol 19: Supplement A Generation of expression calls for RNA-seq data Abstract  PDF
Marta Rosikiewicz, Marc Robinson-Rechavi
Vol 17: Supplement B NOIseq: a RNA-seq differential expression method robust for sequencing depth biases Abstract  PDF
Sonia Tarazona, Fernando García, Alberto Ferrer, Joaquín Dopazo, Ana Conesa
Vol 17: Supplement B bcbio-nextgen: Automated, distributed next-gen sequencing pipeline Abstract  PDF
Roman Valls Guimera
Vol 20 InterOmics Tutorial - Tools and methods for the analysis of omics data and biodiversity Abstract  HTML  PDF
Angelica Tulipano, Andreas Gisel
Vol 17: Supplement B Power and limits of capture‐based, targeted DNA resequencing for mutation detection Abstract  PDF
Fabrice Lopez, Hélène Holota, François-Xavier Théodule, Jean Imbert
Vol 17: Supplement B Abstract  PDF
Athanasia Pavlopoulou, Sophia Kossida
Vol 19: Supplement B An ontology based query engine for querying biological sequences Abstract  HTML  PDF
Martijn Devisscher, Tim De Meyer, Wim Van Criekinge, Peter Dawyndt
Vol 17: Supplement B Statistical approaches for the analysis of RNA-Seq and ChIP-seq data and their integration Abstract  PDF
Claudia Angelini, Italia De Feis
Vol 19: Supplement A Biologist-friendly analysis software for NGS data Abstract  PDF
Aleksi Kallio, Taavi Hupponen, Massimiliano Gentile, Jarno Tuimala, Kimmo Mattila, Ari-Matti Saren, Petri Klemelä, Ilari Scheinin, Eija Korpelainen
Vol 17: Supplement B smallRNA data analysis Abstract  PDF
Angelica Tulipano, Andreas Gisel
Vol 17: Supplement B Digital gene expression data, cross-species conservation and noncoding RNA Abstract  PDF
Nicolas Philippe, Florence Ruffle, Elias Bou-Samra, Anthony Boureux, Thérèse Commes, Eric Rivals
Vol 17: Supplement B TAPYR: An efficient high-throughput sequence aligner for re-sequencing applications Abstract  PDF
Francisco Fernandes, Paulo G.S. da Fonseca, Luis M.S. Russo, Arlindo L. Oliveira, Ana T. Freitas
Vol 17: Supplement B The Seal suite of distributed software for high-throughput sequencing Abstract  PDF
Luca Pireddu, Simone Leo, Gianluigi Zanetti
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