Browse Title Index


 
Issue Title
 
Vol 21: Supplement A Current status of nanopore sequencing using the MinION device – from full length cDNA sequencing to genome assembly improvements Abstract   HTML   PDF
Ola Wallerman
 
Vol 17, No 1: Next Generation Sequencing Data Analysis Cutadapt removes adapter sequences from high-throughput sequencing reads Abstract   HTML   PDF
Marcel Martin
 
Vol 18: Supplement A CytokineDB and CytReD@CROM Abstract   PDF
S Costantini, A Sharma, R Raucci, F Capone, M Miele, E Guerriero, G Castello, M Di Stasio, G Colonna
 
Vol 18: Supplement A Cyto-Sevis: semantic similarity-based visualisation of protein interaction networks Abstract   PDF
PH Guzzi, M Cannataro
 
Vol 21: Supplement A Data deluge demands a training tsunami Abstract   Presentation   HTML   PDF
Eija Korpelainen
 
Vol 18: Supplement B Data modeling: the key to biological data integration Abstract   PDF
François Rechenmann
 
Vol 19: Supplement A De novo assembly and annotation of the grey reindeer lichen (Cladonia rangiferina) transcriptome Abstract   PDF
Sini Junttila, Stephen Rudd
 
Vol 18: Supplement A De novo detection of A-To-I RNA editing sites in human mRNAs by massive transcriptome sequencing Abstract   PDF
E Picardi, A Gallo, S Raho, F Galeano, G Pesole
 
Vol 21: Supplement A Deep insights into Mecp2-driven transcriptional (de)regulation at embryonic developmental stage through RNA-Seq data analysis Abstract   HTML   PDF
Kumar Parijat Tripathi, Maurizio D'Esposito, Mario R Guarracino, Marcella Vacca
 
Vol 19: Supplement A Deep sequencing exposes small RNA transcriptome differences between low- and high-temperature stress responses in Arabidopsis Abstract   PDF
Vesselin Baev, Ivan Milev, Mladen Naydenov, Tihomir Vachev, Elena Apostolova, Nikolay Mehterov, Mariana Gozmanova, Ivan Minkov, Galina Yahubyan
 
Vol 19: Supplement B Describing the genes social networks relying on chromosome conformation capture data Abstract   HTML   PDF
Ivan Merelli, Pietro Liò, Luciano Milanesi
 
Vol 18: Supplement B Detection of allele-specific gene expression on Next Generation Sequencing data Abstract   PDF
Vladan Mijatovic, Luciano Xumerle, Alberto Ferrarini, Ilaria Iacobucci, Chiara Pighi, Antonio Mori, Chiara Zusi, Paola Prandini, Elisabetta Trabetti, Massimo Delledonne, Giovanni Martinelli, Alberto Zamò, Pier F Pignatti, Giovanni Malerba
 
Vol 19: Supplement A Developing a software suite to analyze the interplay between nucleosome arrangement, DNA methylation and transcription factor binding Abstract   PDF
Vladimir B. Teif, Daria A. Beshnova, Yevhen Vainshtein, Thomas Höfer, Karsten Rippe
 
Vol 18: Supplement B Development of a text search engine for medicinal chemistry patents Abstract   PDF
Emilie Pasche, Julien Gobeill, Fatma Oezdemir-Zaech, Therese Vachon, Christian Lovis, Patrick Ruch
 
Vol 18: Supplement A Development of pipeline for exome sequencing data analysis Abstract   PDF
MR De Filippo, G Giurato, C Cantarella, F Rizzo, F Cirillo, A Weisz
 
Vol 18: Supplement A Devising and experimenting correlation-based metrics for evaluating the effectiveness of input encoding techniques in prediction tasks Abstract   PDF
G Armano, E Tamponi
 
Vol 19: Supplement A DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks Abstract   PDF
Saulius Lukauskas, Gabriele Schweikert, Guido Sanguinetti
 
Vol 21: Supplement A DIANA-TarBase v7: indexing hundreds of thousands experimentally supported miRNA:mRNA interactions Abstract   Presentation   HTML   PDF
Dimitra Karagkouni
 
Vol 18: Supplement A Digging in the RNA-seq garbage: evaluating the characteristics of unmapped RNA-seq reads in normal tissues Abstract   PDF
M Carrara, R Calogero
 
Vol 17: Supplement B Digital gene expression data, cross-species conservation and noncoding RNA Abstract   PDF
Nicolas Philippe, Florence Ruffle, Elias Bou-Samra, Anthony Boureux, Thérèse Commes, Eric Rivals
 
Vol 18: Supplement B DiGSNP: a web tool for Disease-Gene-SNP hierarchical prioritization Abstract   PDF
Carmen Navarro, Carlos Cano, Armando Blanco, Fernando García-Alcalde
 
Vol 18: Supplement A Discovery of conserved long non-coding RNAs in vertebrates Abstract   PDF
S Basu, R Sanges
 
Vol 18: Supplement B Distilling structure in scientific workflows Abstract   PDF
Juiqiang Chen, Christine Froidevaux, Carole Goble, Alan R. Williams, Sarah Cohen-Boulakia
 
Vol 18: Supplement A Domain-context information for the improvement of phosphorylation site prediction Abstract   PDF
A Palmeri, M Helmer-Citterich, PF Gherardini
 
Vol 18: Supplement A Drug repositioning through pharmacological spaces integration based on networks projections Abstract   PDF
M Re, M Mesiti, G Valentini
 
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