Section Details

Technical Notes

Issue Title
Vol 28 qualign: solving sequence alignment based on quadratic unconstrained binary optimisation Abstract   HTML   PDF
Yuki Matsumoto, Shota Nakamura
Vol 26 Ten Simples Rules on How to Organise a Bioinformatics Hackathon Abstract   HTML   PDF
Susanne Hollmann, Babette Regierer, Teresa k Attwood, Andreas Gisel, Jacques Van Helden, Gregoire Rossier, Paul J Kersey, Eija Korpelainen, Gert Vriend, Erik Bongcam-Rudloff
Vol 26: Special issue to Biostatistics and Mathematical Modelling in Bioinformatics The Network Analysis Profiler (NAP v2.0): a web tool for visual topological comparison between multiple networks Abstract   HTML   PDF
Mikaela Koutrouli, Theodosios Theodosiou, Ioannis Iliopoulos, Georgios A. Pavlopoulos
Vol 26 KEGG2Net: Deducing gene interaction networks and acyclic graphs from KEGG pathways Abstract   HTML   PDF
Sree K Chanumolu, Mustafa Albahrani, Handan Can, Hasan H Otu
Vol 24 PyFuncover: full proteome search for a specific function using BLAST and PFAM Abstract   HTML   PDF
Yoan Bouzin, Benjamin Thomas Viart, María Moriel-Carretero, Sofia Kossida
Vol 24 Report on the “Advanced Big Data Training School for Life Sciences”, Barcelona 3th-7th September 2018 Abstract   HTML   PDF
Yen Hoang, Juliane Pfeil, Maja Zagorščak, Axel Y. A. Thieffry, Eftim Zdravevski, Živa Ramšak, Petre Lameski, Sabrina K. Schulze, Eleni Papakonstantinou, Louis Papageorgiou, Tarry Singh, Ariel Duarte-López, Marta Pérez-Casany
Vol 23 Mobile microscopy for the examination of blood samples Abstract   HTML   PDF
Juliane Pfeil, Marcus Frohme, Katja Schulze
Vol 23 Establishment of “The South African Bioinformatics Student Council” and Activity Highlights Abstract   HTML   PDF
Candice Nancy Rafael, Jon Ambler, Antoinette Niehaus, James Ross, Ozlem Tastan Bishop
Vol 23 Galaksio, a user friendly workflow-centric front end for Galaxy Abstract   HTML   PDF
Tomas Klingström, Rafael Hernández-de-Diego, Théo Collard, Erik Bongcam-Rudloff
Vol 23 InSyBio ncRNASeq: A web tool for analyzing non-coding RNAs Abstract   HTML   PDF
Aigli Korfiati, Konstantinos Theofilatos, Christos Alexakos, Seferina Mavroudi
Vol 23 PolarFCS: A Multi-Parametric Data Visualisation Aid for Flow Cytometry Assessment Abstract   HTML   PDF
Pavandeep Gill, Joanne Luider, Etienne Mahe
Vol 22 Set up your own bioinformatics server: Chipster in EGI Federated Cloud Abstract   HTML   PDF
Kimmo Mattila, Diego Scardaci, Marica Antonacci, Catalin Condurache
Vol 21 Renewing bioinformatics workflow systems by using a Web 2.0 approach Abstract   HTML   PDF
Roberto Colella, Bachir Balech, Antonella Vaccina, Pietro Leo, Gaetano Scioscia
Vol 21 CexoR: an R/Bioconductor package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates Abstract   HTML   PDF
Pedro Madrigal
Vol 20 Large scale statistical analysis of genome data with Ruby and R: skipping interface libraries Abstract   HTML   PDF
Sergio RP Line, Ana P de Souza, Luciana S Mofatto
Vol 20 Fq_delta - Efficient storage of processed versions of fastq files Abstract   HTML   PDF
Andra Veraart, Henk-Jan van den Ham, Maarten A. Bijl, Arno C. Andeweg, Anita C. Schürch
Vol 19, No 1 Quick Direct-method Controlled (QDC): a simulator of metabolic experiments Abstract   HTML   PDF
Davide Cangelosi, Salvatore Fabbiano, Claudio Felicioli, Luca Freschi, Roberto Marangoni
Vol 18, No 1 Gigsaw – physical simulation of next generation sequencing for education and outreach Abstract   HTML   PDF
David Michael Alan Martin
Vol 18, No 1 Minimum Information About a Peptide Array Experiment (MIAPepAE) Abstract   HTML   PDF
Gordon Botha, Judit Kumuthini
Vol 18, No 1 Using ARC based grids for NGS read mapping - Grid interface for BWA Abstract   HTML   PDF
Kimmo Mattila
Vol 17, No 1: Next Generation Sequencing Data Analysis The future of HOPE: what can and cannot be predicted about the molecular effects of a disease causing point mutation in a protein? Abstract   HTML   PDF
Francesca Camilli, Annika Borrmann, Shima Gholizadeh, Tim AH te Beek, Remko KP Kuipers, Hanka Venselaar
Vol 17, No 1: Next Generation Sequencing Data Analysis GRID distribution supports clustering validation of large mixed microarray data sets Abstract   HTML   PDF
Angelica Tulipano, Carmela Marangi, Leonardo Angelini, Giacinto Donvito, Guido Cuscela, Giorgio Pietro Maggi, Andreas Gisel
Vol 17, No 1: Next Generation Sequencing Data Analysis Command line analysis of ChIP-seq results Abstract   HTML   PDF
Endre Barta
Vol 17, No 1: Next Generation Sequencing Data Analysis Cutadapt removes adapter sequences from high-throughput sequencing reads Abstract   HTML   PDF
Marcel Martin
Vol 16, No 1 Efficient functional bioinformatics tools: towards understanding biological processes Abstract   HTML   PDF Print   PDF Screen
Alberto Pascual-Montano, Jose M Carazo
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