Vol 17, No 1

Next Generation Sequencing Data Analysis

Table of Contents

Entire issue

EMBnet.journal 17.1 PDF
 

ARTICLES

Editorial HTML PDF
  p. 2

Letters to the Editor

Mastering Data-Intensive Collaboration and Decision Making through a Cloud Infrastructure: The Dicode EU project HTML PDF
Nikos Karacapilidis p. 3

News

Introduction into Systems Biology: Basics of Proteomics, Bioinformatics, Biostatistics & Integration of Data Generated by these Fields, Athens, Greece, 26-30 September 2011 PDF
  p. 4
The Bioinformatics Roadshow, 1-3 November 2011, Athens, Greece PDF
  p. 5
ISCB and EMBnet to collaborate on bioinformatics education and training HTML PDF
  p. 6

Reports

SEQAHEAD - COST Action BM1006: Next Generation Sequencing Data Analysis Network HTML PDF
Teresa Attwood, Erik Bongcam-Rudloff, Andreas Gisel pp. 7-9

Technical Notes

Cutadapt removes adapter sequences from high-throughput sequencing reads HTML PDF
Marcel Martin pp. 10-12
Command line analysis of ChIP-seq results HTML PDF
Endre Barta pp. 13-17
GRID distribution supports clustering validation of large mixed microarray data sets HTML PDF
Angelica Tulipano, Carmela Marangi, Leonardo Angelini, Giacinto Donvito, Guido Cuscela, Giorgio Pietro Maggi, Andreas Gisel pp. 18-25
The future of HOPE: what can and cannot be predicted about the molecular effects of a disease causing point mutation in a protein? HTML PDF
Francesca Camilli, Annika Borrmann, Shima Gholizadeh, Tim AH te Beek, Remko KP Kuipers, Hanka Venselaar pp. 25-37

Research Papers

SEQscoring: a tool to facilitate the interpretation of data generated with next generation sequencing technologies HTML PDF
Katarina Truvé, Oscar Eriksson, Martin Norling, Maria Wilbe, Evan Mauceli, Kerstin Lindblad-Toh, Erik Bongcam-Rudloff pp. 38-45
e-RGA: enhanced Reference Guided Assembly of Complex Genomes HTML PDF
Francesco Vezzi, Federica Cattonaro, Alberto Policriti pp. 46-54
Protein Spotlight 128 PDF
  pp. 55-56


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ISSN: 2226-6089