Vol. 17 No. 1: Next Generation Sequencing Data Analysis

Entire issue

• EMBnet.journal 17.1

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ARTICLES

• Editorial

  p. 2

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Letters to the Editor

• Mastering Data-Intensive Collaboration and Decision Making through a Cloud Infrastructure: The Dicode EU project

  Nikos Karacapilidis

  p. 3

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News

• Introduction into Systems Biology: Basics of Proteomics, Bioinformatics, Biostatistics & Integration of Data Generated by these Fields, Athens, Greece, 26-30 September 2011

  Sophia Kossida

  p. 4

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• The Bioinformatics Roadshow, 1-3 November 2011, Athens, Greece

  Sophia Kossida

  p. 5

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• ISCB and EMBnet to collaborate on bioinformatics education and training

  ISCB EMBnet

  p. 6

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Reports

• SEQAHEAD - COST Action BM1006: Next Generation Sequencing Data Analysis Network

  Teresa Attwood, Erik Bongcam-Rudloff, Andreas Gisel

  pp. 7-9

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Technical Notes

• Cutadapt removes adapter sequences from high-throughput sequencing reads

  Marcel Martin

  pp. 10-12

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• Command line analysis of ChIP-seq results

  Endre Barta

  pp. 13-17

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• GRID distribution supports clustering validation of large mixed microarray data sets

  Angelica Tulipano, Carmela Marangi, Leonardo Angelini, Giacinto Donvito, Guido Cuscela, Giorgio Pietro Maggi, Andreas Gisel

  pp. 18-25

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• The future of HOPE: what can and cannot be predicted about the molecular effects of a disease causing point mutation in a protein?

  Francesca Camilli, Annika Borrmann, Shima Gholizadeh, Tim AH te Beek, Remko KP Kuipers, Hanka Venselaar

  pp. 25-37

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Research Papers

• SEQscoring: a tool to facilitate the interpretation of data generated with next generation sequencing technologies

  Katarina Truvé, Oscar Eriksson, Martin Norling, Maria Wilbe, Evan Mauceli, Kerstin Lindblad-Toh, Erik Bongcam-Rudloff

  pp. 38-45

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• e-RGA: enhanced Reference Guided Assembly of Complex Genomes

  Francesco Vezzi, Federica Cattonaro, Alberto Policriti

  pp. 46-54

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• Protein Spotlight 128

  pp. 55-56

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