Vol 17, No 1

Next Generation Sequencing Data Analysis

Table of Contents

Entire issue

EMBnet.journal 17.1
 
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ARTICLES

Editorial
 
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p. 2

Letters to the Editor

Mastering Data-Intensive Collaboration and Decision Making through a Cloud Infrastructure: The Dicode EU project
Nikos Karacapilidis
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p. 3

News

Introduction into Systems Biology: Basics of Proteomics, Bioinformatics, Biostatistics & Integration of Data Generated by these Fields, Athens, Greece, 26-30 September 2011
 
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p. 4
The Bioinformatics Roadshow, 1-3 November 2011, Athens, Greece
 
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p. 5
ISCB and EMBnet to collaborate on bioinformatics education and training
 
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p. 6

Reports

SEQAHEAD - COST Action BM1006: Next Generation Sequencing Data Analysis Network
Teresa Attwood, Erik Bongcam-Rudloff, Andreas Gisel
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pp. 7-9

Technical Notes

Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin
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pp. 10-12
Command line analysis of ChIP-seq results
Endre Barta
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pp. 13-17
GRID distribution supports clustering validation of large mixed microarray data sets
Angelica Tulipano, Carmela Marangi, Leonardo Angelini, Giacinto Donvito, Guido Cuscela, Giorgio Pietro Maggi, Andreas Gisel
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pp. 18-25
The future of HOPE: what can and cannot be predicted about the molecular effects of a disease causing point mutation in a protein?
Francesca Camilli, Annika Borrmann, Shima Gholizadeh, Tim AH te Beek, Remko KP Kuipers, Hanka Venselaar
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pp. 25-37

Research Papers

SEQscoring: a tool to facilitate the interpretation of data generated with next generation sequencing technologies
Katarina Truvé, Oscar Eriksson, Martin Norling, Maria Wilbe, Evan Mauceli, Kerstin Lindblad-Toh, Erik Bongcam-Rudloff
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pp. 38-45
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Francesco Vezzi, Federica Cattonaro, Alberto Policriti
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pp. 46-54
Protein Spotlight 128
 
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pp. 55-56