Vol 19

Supplement B

NETTAB 2013

Table of Contents

Entire issue

EMBnet.journal 19 Suppl. B
 
PDF

ARTICLES

Editorial
 
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p. 2
Preface - NETTAB 2013 Workshop on “Semantic, Social, and Mobile Applications for Bioinformatics and Biomedical Laboratories”
Paolo DM Romano, Nicola Cannata
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pp. 3-4
Conference Programme
 
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pp. 7-10

Keynote Lectures

Facilitating scientific discovery through crowdsourcing and distributed participation
Antony Williams
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p. 12
Semantic technologies for the automation of research in biomedicine
Ross D King
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p. 13
SCIMOBS: the million minds approach revisited in mobile context
Barend Mons
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p. 14

Tutorials

Semantic Web for Life Sciences: vision, aims, tools, platforms
Andrea Splendiani
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p. 16
Open_PHACTS and NanoPublications
Christine Chichester
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p. 17
Standards for Web Applications on Mobile: current state and roadmap
Dominique Hazaël-Massieux
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p. 18
Mobile applications for life sciences: perspectives, limitations, and real examples
Alex Clark
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p. 19

Oral Communications

Mobile applications driven by Open PHACTS semantic web technology
Christine Chichester, Lee Harald, Tim Harder
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pp. 21-23
TagCurate: crowdsourcing the verification of biomedical annotations to mobile users
Bahar Sateli, Sebastien Luong, René Witte
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pp. 24-26
iNGS: a prototype tool for genome interpretation and annotation
Ismael Navas-Delgado, Maria Jesús García Godoy, Fátima Arjona-Pulido, Trinidad Castillo-Castillo, Ana Isabel Ramos-Ostio, José F. Aldana-Montes
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pp. 27-31
The OntoGene literature mining web service
Fabio Rinaldi
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pp. 32-35
Extracting more value from data silos: using the semantic web to link chemistry and biology for innovation
Tim P Eyres
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pp. 36-39
Sprints, Hackathons and Codefests as community gluons in computational biology
Steffen Möller, Enis Afgan, Michael Banck, Peter J. A. Cock, Matus Kalas, Laszlo Kajan, Pjotr Prins, Jacqueline Quinn, Olivier Sallou, Francesco Strozzi, Torsten Seemann, Andreas Tille, Roman Valls Guimera, Toshiaki Katayama, Brad Chapman
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pp. 40-42
Taverna Mobile: Taverna workflows on Android
Hyde Zhang, Stian Soiland-Reyes, Carole Goble
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pp. 43-45
Bio-GraphIIn: a graph-based, integrative and semantically-enabled repository for life science experimental data
Alejandra Gonzalez-Beltran, Eamonn Maguire, Pavlos Georgiou, Susanna-Assunta Sansone, Philippe Rocca-Serra
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pp. 46-50
An ontology based query engine for querying biological sequences
Martijn Devisscher, Tim De Meyer, Wim Van Criekinge, Peter Dawyndt
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pp. 51-55
The representation of biomedical protocols
Larisa N. Soldatova, Ross D. King, Piyali S. Basu, Emma Haddi, Nigel Saunders
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pp. 56-58
The role of parallelism, web services and ontologies in bioinformatics and omics data management and analysis
Mario Cannataro, Pietro Hiram Guzzi
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pp. 59-62

Posters

SstmpDB: a database of single-spanning transmembrane proteins
Olga Bejleri, Zoi Litou, Stavros Hamodrakas
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pp. 64-65
Sinergy: how semantics can improve early prevention of skin cancers
Diletta Romana Cacciagrano, Flavio Corradini, Leonardo Vito, Laura Cavalieri
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pp. 66-69
JavaEE for breakfast: start off on the right foot developing biological Web applications.
Arnaud Ceol, Heiko Muller
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pp. 70-72
Describing the genes social networks relying on chromosome conformation capture data
Ivan Merelli, Pietro Liò, Luciano Milanesi
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pp. 73-75
An ontology describing congenital heart defects data
Charalampos Moschopoulos, Jeroen Breckpot, Yves Moreau
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pp. 76-78
Towards a semantic wiki for human and animal cell lines
Paolo DM Romano, Dan M Bolser
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pp. 79-81
SEBSem: simple and efficient biomedical semantic relatedness measure
Maciej Rybinski, José Francisco Aldana-Montes
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pp. 82-84
SLIMS: a LIMS for handling next-generation sequencing workflows
Francesco Venco, Arnaud Ceol, Heiko Muller
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pp. 85-87