Vol 21

Supplement A

Next Generation Sequencing: a look into the future

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Table of Contents

ARTICLES

Editorial
 
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COST Action BM1006 (SeqAhead) closing conference "Next Generation Sequencing: a look into the future”
Lubos Klucar, Teresa K. Attwood, Erik Bongcam-Rudloff
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Scientific Programme
 
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Keynote Lectures

Power and limitations of RNA-Seq: findings from the SEQC (MAQC-III) Consortium
Paweł Piotr Łabaj
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Population-scale genomics with BiobankCloud and Hops/Hadoop
Jim Dowling
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Data deluge demands a training tsunami
Eija Korpelainen
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Oral Presentations

Reproducible Research in the era of Next Generation Sequencing: current approaches, examples and future perspectives
Claudia Angelini, Dario Righelli, Francesco Russo
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Current status of nanopore sequencing using the MinION device – from full length cDNA sequencing to genome assembly improvements
Ola Wallerman
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Deep insights into Mecp2-driven transcriptional (de)regulation at embryonic developmental stage through RNA-Seq data analysis
Kumar Parijat Tripathi, Maurizio D'Esposito, Mario R Guarracino, Marcella Vacca
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Exploring the activity of microorganisms in the forest soil using metatranscriptomics
Petr Baldrian
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Creating a successful facility for large-scale extraction of DNA, an example from the Swedish Biobank initiative BBMRI.se
James Thompson
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Using neural networks to filter predicted errors in NGS data
Milko Krachunov, Ognyan Kulev, Maria Nisheva, Valeria Simeonova, Deyan Peychev, Dimitar Vassilev
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DIANA-TarBase v7: indexing hundreds of thousands experimentally supported miRNA:mRNA interactions
Dimitra Karagkouni
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Biobanking for the future, how to prepare for the next generation of Next Generation Sequencing
Tomas Klingström
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Introducing Meta2genomics: the search for the “micro-bee”
Jose R Valverde
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Information-theoretic approach for detection of differential splicing from RNA-seq data
Axel Rasche, Ralf Herwig
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iMir: an innovative and complete pipeline for smallRNA-Seq data analysis
Giorgio Giurato, Antonio Rinaldi, Adnan Hashim, Giovanni Nassa, Maria Ravo, Francesca Rizzo, Roberta Tarallo, Angela Cordella, Giovanna Marchese, Domenico Memoli, Alessandro Weisz
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Posters

Microbial analysis of ovine cheese by next generation sequencing
Vladimir Kmet, Dobroslava Bujnakova
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PACMAN: PacBio Methylation Analyzer
Laurent Falquet, Alexis Loetscher
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NORM-SYS - harmonizing standardization processes for model and data exchange in systems biology
Babette Regierer, Susanne Hollmann, Martin Golebiewski
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Targeted amplicon sequencing in genetic diagnostics of patients with cystic fibrosis
Jelena Kusic-Tisma, Aleksandra Divac Rankov, Mila Ljujic, Nadja Pejanovic, Bojana Stanic, Dragica Radojkovic
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Reference leaf transcriptomes for potato cultivars: desiree and PW363
Maja Zagorščak, Marko Petek, Mohamed Zouine, Kristina Gruden
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NGS as a tool for investigating spread of zoonotic bacteria: dealing with source and outbreak genetic variation in a spatio-temporal context
Robert Söderlund, Tomas Jinnerot, Adrien Janssens, Erik Bongcam-Rudloff
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Biobanks and future emerging technologies: new approaches, new pre-analytical challenges
Eva Ortega-Paino, Tomas Klingström, Johanna Ekström
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MetLab: an in silico experimental design, simulation and validation tool for viral metagenomics studies
Martin Norling, Oskar Erik Karlsson, Hadrien Gourlé, Erik Bongcam-Rudloff, Juliette Hayer
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Towards SNP calling in polyploid genomes
Anatoliy Dimitrov, Milko Krachunov, Ognyan Kulev, Jérôme Salse, Irena Avdjieva, Dimitar Vassilev
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Gene set enrichment analysis of neuroendocrine system of the silkworm Bombyx mori
Gabor Beke, Matej Stano, Ivana Daubnerova, Dusan Zitnan, Lubos Klucar
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The NonCode aReNA DB: a non-redundant and integrated collection of non-coding RNAs
Giorgio De Caro, Arianna Consiglio, Domenica D'Elia, Andreas Gisel, Giorgio Grillo, Sabino Liuni, Angelica Tulipano, Flavio Licciulli
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