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Vol 19: Supplement A Automated transcription start site prediction for comparative Transcriptomics using the SuperGenome Abstract  PDF
Alexander Herbig, Cynthia Sharma, Kay Nieselt
 
Vol 19: Supplement A Biologist-friendly analysis software for NGS data Abstract  PDF
Aleksi Kallio, Taavi Hupponen, Massimiliano Gentile, Jarno Tuimala, Kimmo Mattila, Ari-Matti Saren, Petri Klemelä, Ilari Scheinin, Eija Korpelainen
 
Vol 17: Supplement B smallRNA data analysis Abstract  PDF
Angelica Tulipano, Andreas Gisel
 
Vol 17: Supplement B Digital gene expression data, cross-species conservation and noncoding RNA Abstract  PDF
Nicolas Philippe, Florence Ruffle, Elias Bou-Samra, Anthony Boureux, Thérèse Commes, Eric Rivals
 
Vol 17: Supplement B TAPYR: An efficient high-throughput sequence aligner for re-sequencing applications Abstract  PDF
Francisco Fernandes, Paulo G.S. da Fonseca, Luis M.S. Russo, Arlindo L. Oliveira, Ana T. Freitas
 
Vol 17: Supplement B The Seal suite of distributed software for high-throughput sequencing Abstract  PDF
Luca Pireddu, Simone Leo, Gianluigi Zanetti
 
Vol 17: Supplement B Epigenomic and transcriptional effects of Dnmt3b mutations in human ICF syndrome-derived B cell lines. Abstract  PDF
Sole Gatto, Claudia Angelini, Sylwia Leppert, Valentina Proserpio, Sarah Teichmann, Maurizio D’Esposito, Maria R. Matarazzo
 
Vol 17: Supplement B UPPNEX - A solution for Next Generation Sequencing data management and analysis Abstract  PDF
Samuel Lampa, Jonas Hagberg, Ola Spjuth
 
Vol 17: Supplement B EU COST Action TD0801: Statistical Challenges On The 1000 Euro Genome Sequences In Plants Abstract  PDF
Marco C.A.M. Bink, Thomas Schiex
 
Vol 17: Supplement B Read indexing Abstract  PDF
Nicolas Philippe, Mikael Salson, Thierry Lecroq, Martine Leonard, Therese Commes, Eric Rivals
 
Vol 17: Supplement B From cutadapt to sequencetools (sqt): a versatile toolset for sequencing projects Abstract  PDF
Marcel Martin, Sven Rahmann
 
Vol 16, No 1 EMBRACE workshop “NEXT GENERATION SEQUENCING II” Abstract  HTML  PDF Print  PDF Screen
Andreas Gisel, Erik Bongcam-Rudloff
 
Vol 17: Supplement B Linking research data with scholarly publications Abstract  PDF
Teresa K Attwood, Philip McDermott, James Marsh, Steve R Pettifer, David Thorne
 
Vol 19: Supplement A Deep sequencing exposes small RNA transcriptome differences between low- and high-temperature stress responses in Arabidopsis Abstract  PDF
Vesselin Baev, Ivan Milev, Mladen Naydenov, Tihomir Vachev, Elena Apostolova, Nikolay Mehterov, Mariana Gozmanova, Ivan Minkov, Galina Yahubyan
 
Vol 17: Supplement B Improved analysis of fungal communities using the next-generation-sequencing analysis of rpb2 genes Abstract  PDF
Tomas Vetrovsky, Jana Voriskova, Lucia Zifcakova, Michaela Urbanova, Petr Baldrian
 
Vol 29 EpiCass and CassavaNet4Dev Advanced Bioinformatics Workshop Abstract  HTML  PDF
Andreas Gisel, Livia Stavolone, Temitayo Olagunju, Michael Landi, Renaud van Damme, Adnan Niazi, Laurent Falquet, Trushar Shah, Erik Bongcam-Rudloff
 
Vol 17: Supplement B In the Shadow of the Genome: A Challenging Journey to Diversity in Leishmania donovani Abstract  PDF
Hideo Imamura, An Mannaert, Tim Downing, Matthew Berriman, Jean-Claude Dujardin
 
Vol 17: Supplement B NGS data analysis: the user POV Abstract  PDF
Jose R. Valverde, Jose M. Rodríguez, Alexandro Rodriguez-Rojas, Alejandro Couce, Jesus Blazquez
 
Vol 18: Supplement A Non-coding RNA bioinformatics platform for full backing of the high-throughput sequencing experiments generated by next-generation sequencing technologies Abstract  PDF
F Licciulli, A Consiglio, G De Caro, A Gisel, G Grillo, A Tulipano, S Liuni
 
Vol 17: Supplement B IT Future of Medicine: Next Generation Sequencing is the Key to Future Personalized Medicine Abstract  PDF
Hans Lehrach, Babette Regierer
 
Vol 17: Supplement B NGS research and service at the CBU Abstract  PDF
Kjell Petersen, Inge Jonassen
 
Vol 17: Supplement B Algorithm for error detection in metagonomics NGS data Abstract  PDF
Dimitar Vassilev, Milko Krachunov, Ivan Popov, Elena Todorovska, Valeria Simeonova, Pawel Szczesny, Pawel Siedlecki, Urszula Zelenkiewicz
 
Vol 17: Supplement B Massive-scale RNA-Seq experiments in human genetic diseases Abstract  PDF
Valerio Costa, Marianna Aprile, Roberta Esposito, Maria Rosaria Ambrosio, Margherita Scarpato, Carmela Ziviello, Italia De Feis, Claudia Angelini, Alfredo Ciccodicola
 
Vol 17: Supplement B Innovation and Trends with In-Memory Technology Abstract  PDF
Matthias Steinbrecher
 
Vol 17: Supplement B An Integrated RNA-seq Atlas of the Murine T-Helper Cell Transcriptome Abstract  PDF
Andrew Deonarine
 
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